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| Registros recuperados : 11 | |
| 1. |  | SANT'ANA, G. C.; LANES, E. C. M. de; MIRANDA, G. V.; FERREIRA, J. L.; BOREM, A.; FRITSCHE-NETO, R. Análise da diversidade genética entre acessos de milho tolerantes a baixos níveis de nitrogênio e fósforo utilizando marcadores moleculares microssatélites. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 7., 2013, Uberlândia. Variedade melhorada: a força da nossa agricultura: anais. Viçosa, MG: SBMP, 2013. p. 138-141. 1 CD-ROM.| Biblioteca(s): Embrapa Pecuária Sul. |
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| 2. | | FERREIRA, L. M.; SILVA, J. de A.; SANT'ANA, G. C.; CANÇADO, G. M. de A.; BORÉM, A.; FERREIRA, J. L. Application of artificial neural networks in the simulation with genetic data. International Journal of Engineering Inventions, v. 6, n. 12, p. 43-46, Dec. 2017.| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Pecuária Sul. |
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| 4. | | SANT'ANA, G. C.; IVAMOTO, S. T.; DOMINGUES, D.; FERREIRA, R. V.; CHARMETANT, P.; LEROY, T.; PEREIRA, L. F. P. Genomic regions related to altitude adaptation in Coffea arabica. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 9., 2017, Foz de Iguaçu. Melhoramento de plantas: projetando o futuro. Maringá, PR: SBMP, 2017.| Biblioteca(s): Embrapa Café. |
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| 5. | | SANT'ANA, G. C.; FERREIRA, J. L.; ROCHA, H. S.; BORÉM, A.; PASQUAL, M.; CANÇADO, G. M. A. Comparison of a retrotransposon-based marker with microsatellite markers for discriminating accessions of Vitis vinifera. Genetics and Molecular Research, Ribeirão Preto, v. 11, n. 2, p. 1507-1525, 2012.| Biblioteca(s): Embrapa Pecuária Sul. |
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| 6. | | SANT'ANA, G. C.; POT, D.; IVAMOTO, S. T.; DOMINGUES, D. S.; SCHOLZ, M. B. B.; LEROY, T.; PEREIRA, L. F. P. Genomic regions associated to lipids and diterpenes contents slected during domestication and breeding of Coffea arabica. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 9., 2017, Foz de Iguaçu. Melhoramento de plantas: projetando o futuro. Maringá, PR: SBMP, 2017. p. 72| Biblioteca(s): Embrapa Café. |
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| 7. | | CANÇADO, G. M. de A.; BRASILEIRO, A. C. M.; RIBEIRO, A. P.; FERNANDES, M. C. N.; SANT'ANA, G. C.; SOARES, B. D. F.; ROCHA, H. S.; FREITAS, G. F. Plantas transgênicas. Informe Agropecuário, v. 30, n. 253, 2009. p. 14-23.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | SILVA, B. S. R. da; SANT'ANA, G. C.; CHAVES, C. L.; ANDROCIOLI, L. G.; FERREIRA, R. V.; SERA, G. H.; CHARMETANT, P.; LEROY, T.; POT, D.; DOMINGUES, D. S.; PEREIRA, L. F. P. Population structure and genetic relationships between Ethiopian and Brazilian Coffea arabica genotypes revealed by SSR markers. Genetica, v. 147, n. 2, p. 205–216, April 2019.| Biblioteca(s): Embrapa Café. |
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| 9. | | PEREIRA, L. F. P.; SCHENK, J. C. M.; MALUF, M. P.; SANT'ANA, G. C.; NOGUEIRA, L.; PEREIRA, L. A.; SILVA, B. S. R. da; GUIMARÃES, P. de S.; GUERREIRO FILHO, O.; PADILHA, L. Marcadores SNP avaliados em cultivares de Café Arábica. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 10., 2019, Vitória. Pesquisa, Inovação e Sustentabilidade dos Cafés do Brasil. Anais... Brasília, DF: Embrapa Café, 2019. Título em inglês: SNP markers assessed in Arabica coffee cultivars.| Biblioteca(s): Embrapa Café. |
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| 10. | | ARIYOSHI, C.; SANT'ANA, G. C.; FELICIO, M. S.; SERA, G. H.; NOGUEIRA, L. M.; RODRIGUES, L. M. R.; FERREIRA, R. V.; SILVA, B. S. R. da; RESENDE, M. L. V. de; DESTÉFANO, S. A. L.; DOMINGUES, D. S.; PEREIRA, L. F. P. Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. Frontiers in Plant Science, v. 13, article 989847, 2022.| Biblioteca(s): Embrapa Café. |
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| 11. | | SANT'ANA, G. C.; PEREIRA, L. F. P.; POT, D.; IVAMOTO, S. T.; DOMINGUES, D. S.; FERREIRA, R. V.; PAGIATTO, N. F.; SILVA, B. S. R. da; NOGUEIRA, L. M.; KITZBERGER, C. S. G.; SCHOLZ, M. B. S.; OLIVEIRA, F. F. de; SERA, G. H.; PADILHA, L.; LABOUISSE, J-P.; GUYOT, R.; CHARMETANT, P.; LEROY, T. Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L . Scientific Reports, v. 8, n. 465, p. 1-12, 2018| Biblioteca(s): Embrapa Café. |
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| Registros recuperados : 11 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
09/01/2023 |
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Data da última atualização: |
09/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
ARIYOSHI, C.; SANT'ANA, G. C.; FELICIO, M. S.; SERA, G. H.; NOGUEIRA, L. M.; RODRIGUES, L. M. R.; FERREIRA, R. V.; SILVA, B. S. R. da; RESENDE, M. L. V. de; DESTÉFANO, S. A. L.; DOMINGUES, D. S.; PEREIRA, L. F. P. |
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Afiliação: |
CAROLINE ARIYOSHI, UNIVERSIDADE ESTADUAL DE LONDRINA; GUSTAVO CÉSAR SANT'ANA, TROPICAL MELHORAMENTO & GENÉTICA; MARIANE SILVA FELICIO, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; GUSTAVO HIROSHI SERA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; LIVIA MARIA NOGUEIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; LUCAS MATEUS RIVERO RODRIGUES, INSTITUTO AGRONÔMICO; RAFAELLE VECCHIA FERREIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; BRUNA SILVESTRE RODRIGUES DA SILVA, UNIVERSIDADE ESTADUAL DE LONDRINA; MÁRIO LÚCIO VILELA DE RESENDE, UNIVERSIDADE FEDERAL DE LAVRAS; SUZETE APARECIDA LANZA DESTÉFANO, INSTITUTO BIOLÓGICO; DOUGLAS SILVA DOMINGUES, ESCOLA SUPERIOR DE AGRICULTURA LUIZ DE QUEIROZ; LUIZ FILIPE PROTASIO PEREIRA, CNPCa. |
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Título: |
Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Frontiers in Plant Science, v. 13, article 989847, 2022. |
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DOI: |
https://doi.org/10.3389/fpls.2022.989847 |
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Idioma: |
Inglês |
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Conteúdo: |
Bacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history. MenosBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleoti... Mostrar Tudo |
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Thesagro: |
Coffea Arábica. |
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Thesaurus NAL: |
Disease resistance; Genome; Genome-wide association study; Pseudomonas syringae group. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150817/1/Genome-wide-association-study.pdf
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Marc: |
LEADER 03197naa a2200325 a 4500
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024 7 $ahttps://doi.org/10.3389/fpls.2022.989847$2DOI
100 1 $aARIYOSHI, C.
245 $aGenome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica.$h[electronic resource]
260 $c2022
520 $aBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history.
650 $aDisease resistance
650 $aGenome
650 $aGenome-wide association study
650 $aPseudomonas syringae group
650 $aCoffea Arábica
700 1 $aSANT'ANA, G. C.
700 1 $aFELICIO, M. S.
700 1 $aSERA, G. H.
700 1 $aNOGUEIRA, L. M.
700 1 $aRODRIGUES, L. M. R.
700 1 $aFERREIRA, R. V.
700 1 $aSILVA, B. S. R. da
700 1 $aRESENDE, M. L. V. de
700 1 $aDESTÉFANO, S. A. L.
700 1 $aDOMINGUES, D. S.
700 1 $aPEREIRA, L. F. P.
773 $tFrontiers in Plant Science$gv. 13, article 989847, 2022.
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Embrapa Café (CNPCa) |
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